Addressing pandemic-wide systematic errors in the SARS-CoV-2 phylogeny, Hunt, M., Hinrichs, A., Anderson, D., Karim, L., Dearlove, B., Knaggs, J., Constantinides, B., Fowler, P., Rodger, G., Street, T., Lumley, S., Webster, H., Sanderson, T., Ruis, C., de Maio, N., Amenga-Etego, L., Amuzu, D., Avaro, M., Awandare, G., Ayivor-Djanie, R., Bashton, M., Batty, E., Bediako, Y., De Belder, D., Benedetti, E., Bergthaler, A., Boers, S., Campos, J., Carr, R., Cuba, F., Dattero, M., Dejnirattisai, W., Dilthey, A., Duedu, K., Endler, L., Engelmann, I., Francisco, N., Fuchs, J., Gnimpieba, E., Groc, S., Gyamfi, J., Heemskerk, D., Houwaart, T., Hsiao, N., Huska, M., Hölzer, M., Iranzadeh, A., Jarva, H., Jeewandara, C., Jolly, B., Joseph, R., Kant, R., Ki, K., Kurkela, S., Lappalainen, M., Lataretu, M., Liu, C., Malavige, G., Mashe, T., Mongkolsapaya, J., Montes, B., Mora, J., Morang’a, C., Mvula, B., Nagarajan, N., Nelson, A., Ngoi, J., da Paixão, J., Panning, M., Poklepovich, T., Quashie, P., Ranasinghe, D., Russo, M., San, J., Sanderson, N., Scaria, V., Screaton, G., Sironen, T., Sisay, A., Smith, D., Smura, T., Supasa, P., Suphavilai, C., Swann, J., Tegally, H., Tegomoh, B., Vapalahti, O., Walker, A., Wilkinson, R., Williamson, C., de Oliveira, T., Peto, T., Crook, D., Corbett-Detig, R., Iqbal, Z. 30 Apr 2024
COVID-19 risk mitigation in reopening mass cultural events: population-based observational study for the UK Events Research Programme in Liverpool City Region, Burnside, G., Cheyne, C., Leeming, G., Humann, M., Darby, A., Green, M., Crozier, A., Maskell, S., O'Halloran, K., Musi, E., Carmi, E., Khan, N., Fisher, D., Corcoran, R., Dunning, J., Edmunds, W., Tharmaratnam, K., Hughes, D., Malki-Epshtein, L., Cook, M., Roberts, B., Gallagher, E., Howell, K., Chand, M., Kemp, R., Boulter, M., Fowler, T., Semple, M., Coffey, E., Ashton, M., García-Fiñana, M., Buchan, I., Bashton, M., Smith, D., Nelson, A., Young, G. 1 Jan 2024, In: Journal of the Royal Society of Medicine
Influence of maternal folate depletion on Art3 DNA methylation in the murine adult brain: potential consequences for brain and neurocognitive health, Kok, D., Saunders, R., Nelson, A., Smith, D., Ford, D., Mathers, J., McKay, J. 1 May 2024, In: Mutagenesis
Phylogenomic analyses of multidrug resistant Corynebacterium striatum strains isolated from patients in a tertiary care hospital in the UK, Sangal, V., Marrs, E., Nelson, A., Perry, J. 27 May 2024, In: European Journal of Clinical Microbiology and Infectious Diseases
Prevalence of persistent SARS-CoV-2 in a large community surveillance study, Ghafari, M., Hall, M., Golubchik, T., Ayoubkhani, D., House, T., MacIntyre-Cockett, G., Fryer, H., Thomson, L., Nurtay, A., Kemp, S., Ferretti, L., Buck, D., Green, A., Trebes, A., Lonie, L., Piazza, P., Studley, R., Rourke, E., Smith, D., Bashton, M., Nelson, A., Crown, M., McCann, C., Young, G., Santos, R., Richards, Z., Tariq, M., Cahuantzi, R., Barrett, J., Fraser, C., Bonsall, D., Walker, A., Lythgoe, K. 29 Feb 2024, In: Nature
The long and short of it: benchmarking viromics using Illumina, Nanopore and PacBio sequencing technologies, Cook, R., Brown, N., Rihtman, B., Michniewski, S., Redgwell, T., Clokie, M., Stekel, D., Chen, Y., Scanlan, D., Hobman, J., Nelson, A., Jones, M., Smith, D., Millard, A. 20 Feb 2024, In: Microbial genomics
Combining viral genomics and clinical data to assess risk factors for severe COVID-19 (mortality, ICU admission, or intubation) amongst hospital patients in a large acute UK NHS hospital Trust, Foxley-Marrable, M., D'Cruz, L., Meredith, P., Glaysher, S., Beckett, A., Goudarzi, S., Fearn, C., Cook, K., Loveson, K., Dent, H., Paul, H., Elliott, S., Wyllie, S., Lloyd, A., Bicknell, K., Lumley, S., McNicholas, J., Prytherch, D., Lundgren, A., Graur, O., Chauhan, A., Robson, S., Bashton, M., Smith, D., Nelson, A., Young, G. 23 Mar 2023, In: PLoS One
Directions of change in intrinsic case severity across successive SARS-CoV-2 variant waves have been inconsistent, Pascall, D., Vink, E., Blacow, R., Bulteel, N., Campbell, A., Campbell, R., Clifford, S., Davis, C., da Silva Filipe, A., El Sakka, N., Fjodorova, L., Forrest, R., Goldstein, E., Gunson, R., Haughney, J., Holden, M., Honour, P., Hughes, J., James, E., Lewis, T., MacLean, O., McHugh, M., Mollett, G., Nyberg, T., Onishi, Y., Parcell, B., Ray, S., Robertson, D., Seaman, S., Shabaan, S., Shepherd, J., Smollett, K., Templeton, K., Wastnedge, E., Wilkie, C., Williams, T., Thomson, E., Bashton, M., Smith, D., Nelson, A., Young, G. 1 Aug 2023, In: Journal of Infection
Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes, Cotton, S., McHugh, M., Dewar, R., Haas, J., Templeton, K., Robson, S., Connor, T., Loman, N., Golubchik, T., Martinez Nunez, R., Bonsall, D., Rambaut, A., Snell, L., Livett, R., Ludden, C., Corden, S., Nastouli, E., Nebbia, G., Johnston, I., Prieto, J., Saeed, K., Jackson, D., Houlihan, C., Frampton, D., Hamilton, W., Witney, A., Bucca, G., Pope, C., Moore, C., Thomson, E., Cutino-Moguel, T., Harrison, E., Smith, C., Rogan, F., Beckwith, S., Murray, A., Singleton, D., Eastick, K., Sheridan, L., Randell, P., Jackson, L., Ariani, C., Smith, D., Bashton, M., Young, G., McCann, C., Nelson, A., Crown, M., Henderson, J., Yew, W. 1 May 2023, In: Journal of Hospital Infection
Lineage replacement and evolution captured by 3 years of the United Kingdom Coronavirus (COVID-19) Infection Survey, Lythgoe, K., Golubchik, T., Hall, M., House, T., Cahuantzi, R., MacIntyre-Cockett, G., Fryer, H., Thomson, L., Nurtay, A., Ghafani, M., Buck, D., Green, A., Trebes, A., Piazza, P., Lonie, L., Studley, R., Rourke, E., Smith, D., Bashton, M., Nelson, A., Crown, M., McCann, C., Young, G., Andre Nunes Dos Santos, R., Richards, Z., Tariq, A., Fraser, C., Diamond, I., Barrett, J., Walker, A., Bonsall, D. 25 Oct 2023, In: Proceedings of the Royal Society B: Biological Sciences
